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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003145Chondroitin polymerizing factor b. (774 aa)    
Predicted Functional Partners:
ENSCHAP00000025279
Chondroitin sulfate synthase 3.
  
 
0.926
ENSCHAP00000007480
Chondroitin sulfate N-acetylgalactosaminyltransferase 1a.
    
0.881
ENSCHAP00000038327
Chondroitin sulfate N-acetylgalactosaminyltransferase 1b.
    
0.881
chpf2
Chondroitin polymerizing factor 2.
  
  
 
0.850
ENSCHAP00000056233
Chondroitin polymerizing factor a.
  
  
 
0.695
ENSCHAP00000010683
beta-1,4-N-acetyl-galactosaminyl transferase 4b.
    
 0.670
ENSCHAP00000011380
Brevican.
     
 0.554
ENSCHAP00000033660
annotation not available
   
    0.550
ENSCHAP00000050690
ALK and LTK ligand 2b.
   
    0.550
dcn
Decorin.
     
 0.541
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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