STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003165annotation not available (328 aa)    
Predicted Functional Partners:
mettl1
Methyltransferase like 1.
   
 0.999
ENSCHAP00000010185
tRNA methyltransferase 61A.
   
 
 0.994
ENSCHAP00000028168
tRNA methyltransferase 61B.
   
 
 0.990
trmt11
tRNA methyltransferase 11 homolog.
   
 
 0.983
ENSCHAP00000046841
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
 0.983
ENSCHAP00000003903
tRNA methyltransferase 10B.
   
 0.972
ENSCHAP00000011938
BUD23 rRNA methyltransferase and ribosome maturation factor.
   
 
 0.967
trmt112
tRNA methyltransferase subunit 11-2.
   
 
 0.965
pus1
Pseudouridine synthase 1.
   
 
 0.961
trmt6
tRNA methyltransferase 6.
   
 0.950
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.