STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCFC1Host cell factor C1. (1802 aa)    
Predicted Functional Partners:
ENSCHAP00000034369
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.969
ENSCHAP00000004284
Retinoblastoma binding protein 5.
    
 0.935
ENSCHAP00000004720
annotation not available
   
 0.933
OGT
O-linked N-acetylglucosamine (GlcNAc) transferase.
   
 0.933
ENSCHAP00000027219
SET domain containing 1A, histone lysine methyltransferase.
   
 0.930
ENSCHAP00000042546
SET domain containing 1B, histone lysine methyltransferase a.
   
 0.930
ENSCHAP00000058207
WD repeat domain 5.
   
 0.929
ENSCHAP00000033217
BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase).
    
 0.915
TTC6
Tetratricopeptide repeat domain 6.
   
 0.911
ENSCHAP00000030788
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 0.902
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.