STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105906717Dual specificity protein kinase CLK4-like. (428 aa)    
Predicted Functional Partners:
rabggtb
Rab geranylgeranyltransferase subunit beta.
   
    0.590
srsf1
Serine and arginine rich splicing factor 1.
    
 
 0.553
ENSCHAP00000032642
annotation not available
   
   0.505
ENSCHAP00000016617
Si:ch211-220i18.4.
    
 
0.489
ENSCHAP00000018297
annotation not available
    
 
0.489
ENSCHAP00000018368
annotation not available
    
 
0.489
ENSCHAP00000021211
SRSF protein kinase 3.
    
 
0.489
ENSCHAP00000022835
annotation not available
    
 
0.489
LOC105898141
SRSF protein kinase 1-like.
    
 
0.489
ENSCHAP00000047530
SRSF protein kinase 1a.
    
 
0.489
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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