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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003246Urocanate hydratase 1. (704 aa)    
Predicted Functional Partners:
ENSCHAP00000036668
annotation not available
  
 
 0.964
ENSCHAP00000041593
annotation not available
 
 
 0.933
hal
Histidine ammonia-lyase.
 
 
 0.931
ENSCHAP00000041320
annotation not available
 
 
 0.929
LOC105905489
Protein Z-dependent protease inhibitor-like.
   
  0.902
ENSCHAP00000041571
annotation not available
   
 
 0.858
ENSCHAP00000023697
Formimidoyltransferase cyclodeaminase.
   
  
 0.699
ENSCHAP00000029786
annotation not available
   
   0.648
ppil6
Peptidylprolyl isomerase like 6.
    
  0.599
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.596
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.