STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpne2Copine 2. (555 aa)    
Predicted Functional Partners:
ENSCHAP00000013016
Ribonuclease H2, subunit B.
   
 0.866
ENSCHAP00000006066
Phosphatidylinositol 3-kinase, catalytic subunit type 3.
    
 0.579
psme3ip1
Proteasome activator subunit 3 interacting protein 1.
      
 0.535
ruvbl1
RuvB like AAA ATPase 1.
   
 
  0.522
ENSCHAP00000054960
Actin related protein 8.
     
 0.520
ENSCHAP00000026229
Myocardin related transcription factor Ab.
     
 0.518
ENSCHAP00000031048
Myocardin related transcription factor Aa.
     
 0.518
pcsk9
Proprotein convertase subtilisin/kexin type 9.
     
 0.511
sacm1l
SAC1 like phosphatidylinositide phosphatase.
     
 0.507
ENSCHAP00000021169
annotation not available
     
 0.494
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.