STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003262annotation not available (589 aa)    
Predicted Functional Partners:
ENSCHAP00000044122
Calmodulin-like 4b.
   
  0.836
ENSCHAP00000028374
annotation not available
    
 0.817
ENSCHAP00000024060
annotation not available
    
  0.791
ENSCHAP00000006066
Phosphatidylinositol 3-kinase, catalytic subunit type 3.
    
 0.782
ENSCHAP00000049505
Membrane protein, palmitoylated 1.
 
 
  0.694
calm1
Calmodulin.
   
  0.628
ENSCHAP00000007904
annotation not available
   
  0.628
calm1-2
Calmodulin.
   
  0.628
calm1-3
Calmodulin.
   
  0.628
rap1b
RAP1B, member of RAS oncogene family.
   
  0.628
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.