Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cnot1CCR4-NOT transcription complex subunit 1. (2333 aa)    
Predicted Functional Partners:
ENSCHAP00000014171
CCR4-NOT transcription complex, subunit 11.
    
 0.999
ENSCHAP00000040071
CCR4-NOT transcription complex, subunit 10.
    
 0.999
ENSCHAP00000023575
CCR4-NOT transcription complex subunit 9.
    
 0.998
ENSCHAP00000003248
CCR4-NOT transcription complex, subunit 4a.
    
 0.996
LOC105912423
CCR4-NOT transcription complex subunit 4-like.
    
 0.996
ENSCHAP00000046650
CCR4-NOT transcription complex, subunit 2.
   
 0.994
CNOT2
CCR4-NOT transcription complex subunit 2.
   
 0.994
cnot3
CCR4-NOT transcription complex subunit 3.
   
 0.993
ENSCHAP00000045780
CCR4-NOT transcription complex, subunit 3b.
   
 0.993
LOC105912767
CCR4-NOT transcription complex subunit 7.
   
 0.990
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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