STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PET117PET117 homolog. (84 aa)    
Predicted Functional Partners:
ENSCHAP00000007788
Cytochrome c oxidase copper chaperone COX17.
   
  
 0.653
LOC105900835
Cytochrome c oxidase assembly protein COX15 homolog.
    
 
 0.640
pet100
PET100 homolog.
   
  
 0.610
LOC105907487
Cytochrome c oxidase assembly protein COX11, mitochondrial.
    
 
 0.587
pum2
Pumilio RNA binding family member 2.
    
 
 0.572
ENSCHAP00000060015
Pumilio RNA-binding family member 1.
    
 
 0.572
ENSCHAP00000003237
Cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10.
      
 0.536
ENSCHAP00000045005
Si:ch73-71c20.5.
      
 0.531
ENSCHAP00000001198
annotation not available
      
 0.525
ENSCHAP00000017339
bolA family member 1.
      
 0.525
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.