Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003418Zgc:101785. (298 aa)    
Predicted Functional Partners:
ENSCHAP00000032427
Dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive).
   
 0.711
ENSCHAP00000027391
WD repeat domain 90.
   
   0.597
ENSCHAP00000015392
annotation not available
    
 
 0.581
ENSCHAP00000028636
Enkurin, TRPC channel interacting protein.
    
   0.567
ENSCHAP00000034720
Cilia and flagella associated protein 126.
    
   0.567
ENSCHAP00000043394
annotation not available
    
   0.567
C9orf135
Chromosome 9 open reading frame 135.
    
   0.567
ENSCHAP00000057468
Sperm associated antigen 8.
    
   0.567
fam183a
Family with sequence similarity 183 member A.
    
   0.567
pacrg
Parkin coregulated.
    
   0.567
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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