STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003433annotation not available (121 aa)    
Predicted Functional Partners:
ENSCHAP00000015511
PRP3 pre-mRNA processing factor 3 homolog (yeast).
    
 0.998
prpf31
pre-mRNA processing factor 31.
    
 0.998
ENSCHAP00000005016
Ribonuclease P/MRP 38 subunit.
  
 0.995
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.995
lsm4
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.992
prpf8
pre-mRNA processing factor 8.
   
 0.991
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.991
eftud2
Elongation factor Tu GTP binding domain containing 2.
  
 0.991
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
  0.989
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
  0.988
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.