STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003448annotation not available (799 aa)    
Predicted Functional Partners:
ikbkb
Inhibitor of nuclear factor kappa B kinase subunit beta.
    
 0.934
rps27a
Ribosomal protein S27a.
    
  0.746
ENSCHAP00000030291
Ubiquitin B.
    
  0.740
rfxank
Regulatory factor X associated ankyrin containing protein.
   
 0.739
ENSCHAP00000014285
annotation not available
   
 0.719
ENSCHAP00000062558
Interferon induced with helicase C domain 1.
   
 0.719
irf1
Interferon regulatory factor 1.
   
 
 0.676
ENSCHAP00000037197
Ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase).
    
 0.673
ENSCHAP00000033351
TNF receptor-associated factor 6.
   
 0.652
TRAF6
TNF receptor-associated factor 6-like.
   
 0.652
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.