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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPP3CAProtein phosphatase 3 catalytic subunit alpha. (531 aa)    
Predicted Functional Partners:
LOC105901568
Calcineurin subunit B type 1-like.
   
 0.976
ENSCHAP00000039405
WD repeat domain 92.
    
 0.943
ENSCHAP00000042014
Anaphase promoting complex subunit 1.
    
 0.909
NFATC1
Nuclear factor of activated T-cells, cytoplasmic 1-like.
    
 0.903
ENSCHAP00000028806
Nuclear factor of activated T cells 1.
    
 0.902
ENSCHAP00000002445
SMEK homolog 1, suppressor of mek1 (Dictyostelium).
   
 0.897
ptpa
Protein phosphatase 2 phosphatase activator.
    
 0.895
calm1
Calmodulin.
    
 0.887
cdc16
Cell division cycle 16.
   
  0.881
igbp1
Immunoglobulin binding protein 1.
    
 0.880
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.