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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003454annotation not available (199 aa)    
Predicted Functional Partners:
gfer
Growth factor, augmenter of liver regeneration.
    
 0.994
ENSCHAP00000007788
Cytochrome c oxidase copper chaperone COX17.
   
 0.986
timm9
Translocase of inner mitochondrial membrane 9.
   
 0.950
timm10
Translocase of inner mitochondrial membrane 10.
   
 0.949
timm13
Translocase of inner mitochondrial membrane 13.
   
 0.940
pop5
POP5 homolog, ribonuclease P/MRP subunit.
   
 
  0.912
timm8b
Translocase of inner mitochondrial membrane 8 homolog B.
   
 0.872
ENSCHAP00000022018
TSEN34 tRNA splicing endonuclease subunit.
   
 
  0.849
ccs
Copper chaperone for superoxide dismutase.
   
 0.751
atp23
ATP23 metallopeptidase and ATP synthase assembly factor homolog.
    
 
 0.746
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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