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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003476Tnf receptor-associated factor 2a. (597 aa)    
Predicted Functional Partners:
tradd
TNFRSF1A associated via death domain.
    
 0.984
ENSCHAP00000023227
Tumor necrosis factor receptor superfamily, member 1a.
    
 0.978
ENSCHAP00000015917
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
   
 0.957
LOC105909873
Tumor necrosis factor receptor superfamily member 1B-like.
   
 0.952
birc2
Baculoviral IAP repeat containing 2.
   
 0.948
ENSCHAP00000048322
X-linked inhibitor of apoptosis.
   
 0.940
ENSCHAP00000048013
Mitogen-activated protein kinase kinase kinase 7.
   
 0.937
map3k5
Mitogen-activated protein kinase kinase kinase 5.
    
 0.935
ENSCHAP00000036978
Si:ch211-1i11.3.
    
 0.935
ENSCHAP00000000136
annotation not available
    
 0.929
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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