STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
def8Differentially expressed in FDCP 8 homolog. (438 aa)    
Predicted Functional Partners:
ENSCHAP00000037967
UV radiation resistance associated gene.
    
 0.877
ENSCHAP00000006066
Phosphatidylinositol 3-kinase, catalytic subunit type 3.
    
 
 0.647
becn1
Beclin 1.
    
 
 0.638
tcf25
Transcription factor 25.
 
    
 0.557
ENSCHAP00000001552
Programmed cell death 5.
      
 0.525
plekhm3
Pleckstrin homology domain containing M3.
    
 
0.524
ENSCHAP00000007540
Zinc finger protein 276.
      
 0.521
ENSCHAP00000035653
Inositol polyphosphate-5-phosphatase D.
   
  
 0.521
ENSCHAP00000017699
Phosphoinositide-3-kinase, regulatory subunit 4.
    
 
 0.489
ENSCHAP00000006624
ABI family, member 3a.
      
 0.445
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.