ENSCHAP00000003580 protein (Clupea harengus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCHAP00000003580

Multiple EGF-like-domains 11. (1046 aa)

Predicted Functional Partners:

ENSCHAP00000012293

0.674

lama1

0.674

ENSCHAP00000006055

0.624

ENSCHAP00000009036

0.624

lama4

0.624

LAMA3

0.624

ENSCHAP00000005008

0.619

ENSCHAP00000023060

0.593

ENSCHAP00000004709

0.574

ENSCHAP00000046214

0.574

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCHAP00000003580	ENSCHAP00000004709	ENSCHAP00000003580	ENSCHAP00000004709	Multiple EGF-like-domains 11.	annotation not available	0.574
ENSCHAP00000003580	ENSCHAP00000005008	ENSCHAP00000003580	ENSCHAP00000005008	Multiple EGF-like-domains 11.	Complement component 8, beta polypeptide.	0.619
ENSCHAP00000003580	ENSCHAP00000006055	ENSCHAP00000003580	ENSCHAP00000006055	Multiple EGF-like-domains 11.	annotation not available	0.624
ENSCHAP00000003580	ENSCHAP00000009036	ENSCHAP00000003580	ENSCHAP00000009036	Multiple EGF-like-domains 11.	Laminin, alpha 5.	0.624
ENSCHAP00000003580	ENSCHAP00000012293	ENSCHAP00000003580	ENSCHAP00000012293	Multiple EGF-like-domains 11.	annotation not available	0.674
ENSCHAP00000003580	ENSCHAP00000023060	ENSCHAP00000003580	ENSCHAP00000023060	Multiple EGF-like-domains 11.	Integrin, beta 4.	0.593
ENSCHAP00000003580	ENSCHAP00000046214	ENSCHAP00000003580	ENSCHAP00000046214	Multiple EGF-like-domains 11.	Integrin, alpha 3b.	0.574
ENSCHAP00000003580	LAMA3	ENSCHAP00000003580	ENSCHAP00000058190	Multiple EGF-like-domains 11.	Laminin subunit alpha 3.	0.624
ENSCHAP00000003580	lama1	ENSCHAP00000003580	ENSCHAP00000059943	Multiple EGF-like-domains 11.	Laminin subunit alpha 1.	0.674
ENSCHAP00000003580	lama4	ENSCHAP00000003580	ENSCHAP00000043545	Multiple EGF-like-domains 11.	Laminin subunit alpha 4.	0.624
ENSCHAP00000004709	ENSCHAP00000003580	ENSCHAP00000004709	ENSCHAP00000003580	annotation not available	Multiple EGF-like-domains 11.	0.574
ENSCHAP00000004709	ENSCHAP00000009036	ENSCHAP00000004709	ENSCHAP00000009036	annotation not available	Laminin, alpha 5.	0.818
ENSCHAP00000004709	ENSCHAP00000023060	ENSCHAP00000004709	ENSCHAP00000023060	annotation not available	Integrin, beta 4.	0.933
ENSCHAP00000004709	ENSCHAP00000046214	ENSCHAP00000004709	ENSCHAP00000046214	annotation not available	Integrin, alpha 3b.	0.854
ENSCHAP00000004709	LAMA3	ENSCHAP00000004709	ENSCHAP00000058190	annotation not available	Laminin subunit alpha 3.	0.913
ENSCHAP00000004709	lama1	ENSCHAP00000004709	ENSCHAP00000059943	annotation not available	Laminin subunit alpha 1.	0.898
ENSCHAP00000004709	lama4	ENSCHAP00000004709	ENSCHAP00000043545	annotation not available	Laminin subunit alpha 4.	0.771
ENSCHAP00000005008	ENSCHAP00000003580	ENSCHAP00000005008	ENSCHAP00000003580	Complement component 8, beta polypeptide.	Multiple EGF-like-domains 11.	0.619
ENSCHAP00000005008	ENSCHAP00000023060	ENSCHAP00000005008	ENSCHAP00000023060	Complement component 8, beta polypeptide.	Integrin, beta 4.	0.428
ENSCHAP00000006055	ENSCHAP00000003580	ENSCHAP00000006055	ENSCHAP00000003580	annotation not available	Multiple EGF-like-domains 11.	0.624