STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam118bFamily with sequence similarity 118 member B. (360 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.676
ENSCHAP00000017693
Si:dkey-106g10.7.
   
 0.649
ENSCHAP00000025049
annotation not available
    
 0.646
bbs9
Bardet-Biedl syndrome 9.
    
 0.642
ENSCHAP00000060131
Cyclin G associated kinase.
   
 0.625
ENSCHAP00000008049
enoyl-CoA delta isomerase 2.
    
  0.614
mars1
methionyl-tRNA synthetase 1.
   
 0.611
ENSCHAP00000044731
annotation not available
    
 0.604
RNF146
Ring finger protein 146.
   
 0.598
ENSCHAP00000027391
WD repeat domain 90.
    
 0.585
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.