STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003642RWD domain containing 2B. (317 aa)    
Predicted Functional Partners:
ube2i
Ubiquitin conjugating enzyme E2 I.
    
  0.923
LOC105890774
SUMO-conjugating enzyme UBC9-like.
    
  0.923
ENSCHAP00000026674
Growth arrest and DNA-damage-inducible, gamma a.
    
 
 0.755
ENSCHAP00000010604
annotation not available
    
  0.738
LOC105908591
BTB/POZ domain-containing protein KCTD5-like.
    
  0.738
sae1
SUMO1 activating enzyme subunit 1.
    
 0.724
LOC105909948
Histone-lysine N-methyltransferase SETMAR.
   
 
 0.582
uba2
Ubiquitin like modifier activating enzyme 2.
    
  0.579
ENSCHAP00000037894
annotation not available
    
 
 0.563
sumo1
Small ubiquitin like modifier 1.
   
  0.545
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.