STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003684DEAD (Asp-Glu-Ala-Asp) box helicase 1. (740 aa)    
Predicted Functional Partners:
rtraf
RNA transcription, translation and transport factor.
   
 0.998
rtcb
RNA 2',3'-cyclic phosphate and 5'-OH ligase.
   
 0.997
ENSCHAP00000062589
Family with sequence similarity 98 member A.
   
 0.995
ENSCHAP00000005662
Family with sequence similarity 98 member B.
    
 0.994
LOC105893287
Chromosome unknown open reading frame, human C2orf49.
    
 0.990
ENSCHAP00000018033
Im:7138535.
   
 0.975
ENSCHAP00000038277
Zinc finger and BTB domain containing 8 opposite strand.
     
 0.962
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
   
 0.912
cops3
COP9 signalosome subunit 3.
   
   0.834
ENSCHAP00000019222
Proteasome 26S subunit, ATPase 5.
   
 
 0.804
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.