LOC105905455 protein (Clupea harengus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC105905455

Transient receptor potential cation channel subfamily V member 5-like. (734 aa)

Predicted Functional Partners:

ENSCHAP00000031569

0.885

calm1

0.843

ENSCHAP00000007904

0.823

calm1-2

0.823

calm1-3

0.823

calm1-4

0.823

ENSCHAP00000000290

0.792

ENSCHAP00000017630

0.792

LOC105899109

0.792

ENSCHAP00000031909

0.667

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCHAP00000000290	ENSCHAP00000007904	ENSCHAP00000000290	ENSCHAP00000007904	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a.	annotation not available	0.588
ENSCHAP00000000290	LOC105899109	ENSCHAP00000000290	ENSCHAP00000039698	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a.	cAMP-dependent protein kinase catalytic subunit beta.	0.824
ENSCHAP00000000290	LOC105905455	ENSCHAP00000000290	ENSCHAP00000003685	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a.	Transient receptor potential cation channel subfamily V member 5-like.	0.792
ENSCHAP00000000290	calm1	ENSCHAP00000000290	ENSCHAP00000006224	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a.	Calmodulin.	0.588
ENSCHAP00000000290	calm1-2	ENSCHAP00000000290	ENSCHAP00000008196	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a.	Calmodulin.	0.588
ENSCHAP00000000290	calm1-3	ENSCHAP00000000290	ENSCHAP00000013568	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a.	Calmodulin.	0.588
ENSCHAP00000000290	calm1-4	ENSCHAP00000000290	ENSCHAP00000035303	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a.	Calmodulin.	0.588
ENSCHAP00000007904	ENSCHAP00000000290	ENSCHAP00000007904	ENSCHAP00000000290	annotation not available	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a.	0.588
ENSCHAP00000007904	ENSCHAP00000017630	ENSCHAP00000007904	ENSCHAP00000017630	annotation not available	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b.	0.588
ENSCHAP00000007904	LOC105899109	ENSCHAP00000007904	ENSCHAP00000039698	annotation not available	cAMP-dependent protein kinase catalytic subunit beta.	0.588
ENSCHAP00000007904	LOC105905455	ENSCHAP00000007904	ENSCHAP00000003685	annotation not available	Transient receptor potential cation channel subfamily V member 5-like.	0.823
ENSCHAP00000017630	ENSCHAP00000007904	ENSCHAP00000017630	ENSCHAP00000007904	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b.	annotation not available	0.588
ENSCHAP00000017630	LOC105899109	ENSCHAP00000017630	ENSCHAP00000039698	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b.	cAMP-dependent protein kinase catalytic subunit beta.	0.824
ENSCHAP00000017630	LOC105905455	ENSCHAP00000017630	ENSCHAP00000003685	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b.	Transient receptor potential cation channel subfamily V member 5-like.	0.792
ENSCHAP00000017630	calm1	ENSCHAP00000017630	ENSCHAP00000006224	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b.	Calmodulin.	0.588
ENSCHAP00000017630	calm1-2	ENSCHAP00000017630	ENSCHAP00000008196	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b.	Calmodulin.	0.588
ENSCHAP00000017630	calm1-3	ENSCHAP00000017630	ENSCHAP00000013568	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b.	Calmodulin.	0.588
ENSCHAP00000017630	calm1-4	ENSCHAP00000017630	ENSCHAP00000035303	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b.	Calmodulin.	0.588
ENSCHAP00000031569	ENSCHAP00000031909	ENSCHAP00000031569	ENSCHAP00000031909	Transient receptor potential cation channel, subfamily M, member 2.	Transient receptor potential cation channel, subfamily M, member 6.	0.840
ENSCHAP00000031569	LOC105905455	ENSCHAP00000031569	ENSCHAP00000003685	Transient receptor potential cation channel, subfamily M, member 2.	Transient receptor potential cation channel subfamily V member 5-like.	0.885