Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003686annotation not available (346 aa)    
Predicted Functional Partners:
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
    
  0.507
ENSCHAP00000062146
BRCA1 associated RING domain 1.
    
 0.491
ENSCHAP00000029214
Recombination activating gene 2.
   
 0.486
rps27a
Ribosomal protein S27a.
    
  0.448
ENSCHAP00000030857
annotation not available
    
  0.427
ENSCHAP00000038167
annotation not available
    
  0.424
babam1
BRISC and BRCA1 A complex member 1.
    
  0.408
ENSCHAP00000055385
PVR cell adhesion molecule related 2 like.
    
  0.404
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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