Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003701Paralemmin 1a. (449 aa)    
Predicted Functional Partners:
ENSCHAP00000027513
annotation not available
    
 
 0.882
ENSCHAP00000041095
Sorting nexin 16.
    
   0.737
LOC105898159
Clupea harengus gonadotropin subunit beta-2 (LOC105898159), mRNA.
      
 0.633
ENSCHAP00000035070
Heme oxygenase 1a.
    
   0.562
ENSCHAP00000056223
annotation not available
    
   0.562
hmox2
Heme oxygenase 2.
    
   0.562
rabggtb
Rab geranylgeranyltransferase subunit beta.
    
   0.524
ENSCHAP00000040212
Leucine zipper, putative tumor suppressor 1.
      
 0.472
ENSCHAP00000010615
Mitochondrial ribosomal protein L4.
      
 0.469
LOC105897547
Anoctamin-6-like.
      
 0.430
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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