STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003766annotation not available (120 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.814
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
   
  0.781
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.677
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.670
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.667
ncbp2
Nuclear cap binding protein subunit 2.
    
 0.660
sf3b1
Splicing factor 3b subunit 1.
   
 0.654
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
 0.649
mysm1
Myb like, SWIRM and MPN domains 1.
   
 0.642
ENSCHAP00000035894
Splicing factor 3b, subunit 2.
   
 0.637
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.