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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smim12Small integral membrane protein 12. (91 aa)    
Predicted Functional Partners:
ENSCHAP00000023152
Heat shock protein 9.
  
 0.914
ENSCHAP00000060873
NOP56 ribonucleoprotein homolog.
   
   0.874
utp15
UTP15 small subunit processome component.
   
  
 0.873
ENSCHAP00000046982
Proteasome 26S subunit, non-ATPase 1.
   
  0.863
wdr6
WD repeat domain 6.
   
   0.858
ASF1B
Anti-silencing function 1B histone chaperone.
   
  
 0.855
CLPB
ClpB homolog, mitochondrial AAA ATPase chaperonin.
  
 0.825
ENSCHAP00000052840
Superoxide dismutase 2, mitochondrial.
  
 
 0.806
ENSCHAP00000060613
Mitochondrial rRNA methyltransferase 2.
  
    0.779
nipsnap2
Nipsnap homolog 2.
   
  
 0.769
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.