STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003852penta-EF-hand domain containing 1. (296 aa)    
Predicted Functional Partners:
sec31a
SEC31 homolog A, COPII coat complex component.
    
 0.957
ENSCHAP00000054609
SEC31 homolog B, COPII coat complex component.
    
 0.955
ENSCHAP00000027667
Cullin 3a.
    
 0.911
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.902
pdcd6ip
Programmed cell death 6 interacting protein.
    
 
 0.886
ENSCHAP00000062014
Kelch-like family member 8.
    
 0.856
ENSCHAP00000001115
Kelch-like family member 7.
    
  0.852
ENSCHAP00000001317
Kelch-like family member 24a.
    
  0.852
klhl22
Kelch like family member 22.
    
  0.852
ENSCHAP00000047744
annotation not available
    
  0.851
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.