ENSCHAP00000003882 protein (Clupea harengus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCHAP00000003882

annotation not available (629 aa)

Predicted Functional Partners:

arl14ep

0.895

ENSCHAP00000011965

0.891

LOC105898702

0.891

ENSCHAP00000036015

0.891

LOC105909948

0.888

ENSCHAP00000054471

0.880

ENSCHAP00000021042

0.866

plod2

0.866

ENSCHAP00000037330

0.865

ENSCHAP00000004205

0.864

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCHAP00000003882	ENSCHAP00000004205	ENSCHAP00000003882	ENSCHAP00000004205	annotation not available	DOT1-like histone H3K79 methyltransferase.	0.864
ENSCHAP00000003882	ENSCHAP00000011965	ENSCHAP00000003882	ENSCHAP00000011965	annotation not available	annotation not available	0.891
ENSCHAP00000003882	ENSCHAP00000021042	ENSCHAP00000003882	ENSCHAP00000021042	annotation not available	Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.	0.866
ENSCHAP00000003882	ENSCHAP00000036015	ENSCHAP00000003882	ENSCHAP00000036015	annotation not available	Activating transcription factor 7 interacting protein.	0.891
ENSCHAP00000003882	ENSCHAP00000037330	ENSCHAP00000003882	ENSCHAP00000037330	annotation not available	Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.	0.865
ENSCHAP00000003882	ENSCHAP00000054471	ENSCHAP00000003882	ENSCHAP00000054471	annotation not available	annotation not available	0.880
ENSCHAP00000003882	LOC105898702	ENSCHAP00000003882	ENSCHAP00000018757	annotation not available	Uncharacterized LOC105898702.	0.891
ENSCHAP00000003882	LOC105909948	ENSCHAP00000003882	ENSCHAP00000055848	annotation not available	Histone-lysine N-methyltransferase SETMAR.	0.888
ENSCHAP00000003882	arl14ep	ENSCHAP00000003882	ENSCHAP00000011471	annotation not available	ADP ribosylation factor like GTPase 14 effector protein.	0.895
ENSCHAP00000003882	plod2	ENSCHAP00000003882	ENSCHAP00000060524	annotation not available	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.	0.866
ENSCHAP00000004205	ENSCHAP00000003882	ENSCHAP00000004205	ENSCHAP00000003882	DOT1-like histone H3K79 methyltransferase.	annotation not available	0.864
ENSCHAP00000004205	LOC105909948	ENSCHAP00000004205	ENSCHAP00000055848	DOT1-like histone H3K79 methyltransferase.	Histone-lysine N-methyltransferase SETMAR.	0.913
ENSCHAP00000011965	ENSCHAP00000003882	ENSCHAP00000011965	ENSCHAP00000003882	annotation not available	annotation not available	0.891
ENSCHAP00000011965	arl14ep	ENSCHAP00000011965	ENSCHAP00000011471	annotation not available	ADP ribosylation factor like GTPase 14 effector protein.	0.834
ENSCHAP00000021042	ENSCHAP00000003882	ENSCHAP00000021042	ENSCHAP00000003882	Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.	annotation not available	0.866
ENSCHAP00000021042	ENSCHAP00000037330	ENSCHAP00000021042	ENSCHAP00000037330	Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.	Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.	0.852
ENSCHAP00000021042	LOC105909948	ENSCHAP00000021042	ENSCHAP00000055848	Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.	Histone-lysine N-methyltransferase SETMAR.	0.595
ENSCHAP00000021042	plod2	ENSCHAP00000021042	ENSCHAP00000060524	Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.	0.853
ENSCHAP00000036015	ENSCHAP00000003882	ENSCHAP00000036015	ENSCHAP00000003882	Activating transcription factor 7 interacting protein.	annotation not available	0.891
ENSCHAP00000036015	arl14ep	ENSCHAP00000036015	ENSCHAP00000011471	Activating transcription factor 7 interacting protein.	ADP ribosylation factor like GTPase 14 effector protein.	0.834