STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003886Cylindromatosis (turban tumor syndrome), b. (697 aa)    
Predicted Functional Partners:
ENSCHAP00000023227
Tumor necrosis factor receptor superfamily, member 1a.
    
 0.969
ENSCHAP00000015917
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
    
 0.949
ENSCHAP00000030291
Ubiquitin B.
   
  0.948
rps27a
Ribosomal protein S27a.
    
  0.948
ENSCHAP00000030857
annotation not available
    
  0.925
ENSCHAP00000049451
Spermatogenesis associated 2.
    
 0.905
ENSCHAP00000047220
Inhibitor of nuclear factor kappa B kinase subunit epsilon.
   
 0.903
ENSCHAP00000045127
Sequestosome 1.
    
 0.888
mib2
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.887
ENSCHAP00000054780
Caspase 10, apoptosis-related cysteine peptidase.
    
 0.882
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.