STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003887Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a. (379 aa)    
Predicted Functional Partners:
nelfcd
Negative elongation factor complex member C/D.
    
 0.969
nelfb
Negative elongation factor complex member B.
   
 0.966
ENSCHAP00000026902
Negative elongation factor complex member E.
   
 0.962
supt5h
SPT5 homolog, DSIF elongation factor subunit.
   
 0.946
ENSCHAP00000048257
Glucosaminyl (N-acetyl) transferase 4a.
   
 0.923
polr2h
RNA polymerase II subunit H.
    
  0.919
galnt2
Polypeptide N-acetylgalactosaminyltransferase 2.
     
 0.909
GALNT5
Polypeptide N-acetylgalactosaminyltransferase 5.
     
 0.900
polr2b
RNA polymerase II subunit B.
    
  0.897
ENSCHAP00000035435
Polymerase (RNA) II (DNA directed) polypeptide C.
    
  0.890
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.