Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC105893872Metal transporter CNNM4-like. (764 aa)    
Predicted Functional Partners:
gmps
Guanine monophosphate synthase.
    
 0.728
ptp4a1
Protein tyrosine phosphatase 4A1.
    
 
 0.716
LOC105912510
Protein tyrosine phosphatase type IVA 2.
    
 
 0.716
LOC105913312
Phospholipid-transporting ATPase ID-like.
  
 
 0.686
ENSCHAP00000021041
ADP-ribosylation factor-like 15b.
   
 
 0.682
ENSCHAP00000056533
ADP-ribosylation factor-like 15a.
   
 
 0.682
ENSCHAP00000054107
5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.
    
 0.680
nt5e
5'-nucleotidase ecto.
    
 0.623
LOC105894157
5'-nucleotidase-like.
    
 0.623
LOC105899652
Protein tyrosine phosphatase type IVA 2-like.
    
 
 0.603
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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