Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003941annotation not available (676 aa)    
Predicted Functional Partners:
ENSCHAP00000049610
annotation not available
    
   0.567
ENSCHAP00000058691
NME/NM23 family member 8.
    
   0.567
ENSCHAP00000027391
WD repeat domain 90.
   
   0.557
ripk2
Receptor interacting serine/threonine kinase 2.
   
 0.466
ENSCHAP00000058704
Adhesion G protein-coupled receptor G1.
   
 0.466
ikbkb
Inhibitor of nuclear factor kappa B kinase subunit beta.
    
  0.459
rps27a
Ribosomal protein S27a.
    
  0.445
tab1
TGF-beta activated kinase 1 (MAP3K7) binding protein 1.
   
 0.439
ppil6
Peptidylprolyl isomerase like 6.
    
   0.435
sugt1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
    
  0.434
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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