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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003962EFR3 homolog Ba (S. cerevisiae). (850 aa)    
Predicted Functional Partners:
ENSCHAP00000011970
Tetratricopeptide repeat domain 7B.
   
 
 0.882
ENSCHAP00000034589
Tetratricopeptide repeat domain 7A.
   
 
 0.878
ENSCHAP00000009859
Phosphatidylinositol 4-kinase, catalytic, alpha b.
   
 
 0.807
ENSCHAP00000041812
Phosphatidylinositol 4-kinase, catalytic, alpha a.
   
 
 0.807
ENSCHAP00000048371
Mediator complex subunit 14.
   
 
  0.629
ENSCHAP00000027704
annotation not available
   
 
  0.628
ENSCHAP00000040378
Ribosomal protein S3A.
    
 
 0.616
mcm8
Minichromosome maintenance 8 homologous recombination repair factor.
   
 
  0.553
LOC105906971
Maternal DNA replication licensing factor mcm6-like.
   
 
  0.553
ENSCHAP00000045149
Minichromosome maintenance complex component 6.
   
 
  0.553
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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