STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000003979Tubulin, alpha 8 like. (454 aa)    
Predicted Functional Partners:
ENSCHAP00000055348
annotation not available
  
0.917
ENSCHAP00000022762
annotation not available
  
0.913
ENSCHAP00000019913
Dynein, cytoplasmic 1, intermediate chain 2b.
    
 0.912
ENSCHAP00000061800
Dynein, cytoplasmic 1, intermediate chain 2a.
    
 0.912
ENSCHAP00000000313
annotation not available
  
0.911
tubb4b
Tubulin beta 4B class IVb.
  
0.910
ENSCHAP00000020868
annotation not available
  
0.910
ENSCHAP00000048384
Dynein, cytoplasmic 1, heavy chain 1.
 
  
 0.906
ENSCHAP00000024515
Dynein, cytoplasmic 1, intermediate chain 1.
    
 0.896
DYNC1I1
Dynein cytoplasmic 1 intermediate chain 1.
    
 0.896
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.