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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105909542Retinol dehydrogenase 8-like. (317 aa)    
Predicted Functional Partners:
lrat
Lecithin retinol acyltransferase.
    
 0.858
ENSCHAP00000044484
Aldehyde dehydrogenase 1 family, member A2.
  
 0.858
ENSCHAP00000017144
Lecithin retinol acyltransferase b, tandem duplicate 1.
    
 0.849
LOC105904876
Lecithin retinol acyltransferase-like.
    
  0.837
ENSCHAP00000001540
Cytochrome P450, family 27, subfamily C, polypeptide 1.
   
 
 0.835
LOC105891210
Cytochrome P450 26A1.
   
 
 0.835
ENSCHAP00000030317
Retinol saturase (all-trans-retinol 13,14-reductase).
    
 0.834
ENSCHAP00000013739
Diacylglycerol O-acyltransferase 1b.
   
 
 0.831
ENSCHAP00000041652
Beta-carotene oxygenase 1.
   
 
 0.829
ENSCHAP00000041184
Aldehyde oxidase 6.
   
 
 0.813
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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