STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105894429Tudor domain-containing protein 6-like. (2332 aa)    
Predicted Functional Partners:
ENSCHAP00000011506
Piwi-like RNA-mediated gene silencing 1.
   
 0.948
ENSCHAP00000060179
Piwi-like RNA-mediated gene silencing 2.
   
 0.944
ENSCHAP00000046655
Dicer 1, ribonuclease type III.
  
 
 0.720
ENSCHAP00000006978
Tudor domain containing 9.
  
0.700
ENSCHAP00000025840
Ankyrin repeat, SAM and basic leucine zipper domain containing 1.
  
 0.691
ENSCHAP00000059861
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
 0.689
ENSCHAP00000014159
Tudor domain containing 12.
   
 0.660
aprt
Adenine phosphoribosyltransferase.
    
 0.653
ENSCHAP00000010230
DEAD (Asp-Glu-Ala-Asp) box helicase 61.
   
 0.639
ENSCHAP00000024189
annotation not available
   
 0.639
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.