ENSCHAP00000004007 protein (Clupea harengus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCHAP00000004007

annotation not available (245 aa)

Predicted Functional Partners:

ENSCHAP00000010391

0.656

ENSCHAP00000037373

0.633

ENSCHAP00000002550

0.626

ENSCHAP00000029009

0.626

ENSCHAP00000029858

0.626

ENSCHAP00000030214

0.626

ENSCHAP00000032552

0.626

ENSCHAP00000046354

0.626

ENSCHAP00000057215

0.626

cct5

0.578

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCHAP00000002550	ENSCHAP00000004007	ENSCHAP00000002550	ENSCHAP00000004007	TNF receptor-associated protein 1.	annotation not available	0.626
ENSCHAP00000002550	ENSCHAP00000010391	ENSCHAP00000002550	ENSCHAP00000010391	TNF receptor-associated protein 1.	Chaperonin containing TCP1, subunit 7 (eta).	0.886
ENSCHAP00000002550	ENSCHAP00000037373	ENSCHAP00000002550	ENSCHAP00000037373	TNF receptor-associated protein 1.	Heat shock protein 90, beta (grp94), member 1.	0.756
ENSCHAP00000002550	cct5	ENSCHAP00000002550	ENSCHAP00000022063	TNF receptor-associated protein 1.	Chaperonin containing TCP1 subunit 5.	0.887
ENSCHAP00000004007	ENSCHAP00000002550	ENSCHAP00000004007	ENSCHAP00000002550	annotation not available	TNF receptor-associated protein 1.	0.626
ENSCHAP00000004007	ENSCHAP00000010391	ENSCHAP00000004007	ENSCHAP00000010391	annotation not available	Chaperonin containing TCP1, subunit 7 (eta).	0.656
ENSCHAP00000004007	ENSCHAP00000029009	ENSCHAP00000004007	ENSCHAP00000029009	annotation not available	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	0.626
ENSCHAP00000004007	ENSCHAP00000029858	ENSCHAP00000004007	ENSCHAP00000029858	annotation not available	TSC complex subunit 1a.	0.626
ENSCHAP00000004007	ENSCHAP00000030214	ENSCHAP00000004007	ENSCHAP00000030214	annotation not available	annotation not available	0.626
ENSCHAP00000004007	ENSCHAP00000032552	ENSCHAP00000004007	ENSCHAP00000032552	annotation not available	annotation not available	0.626
ENSCHAP00000004007	ENSCHAP00000037373	ENSCHAP00000004007	ENSCHAP00000037373	annotation not available	Heat shock protein 90, beta (grp94), member 1.	0.633
ENSCHAP00000004007	ENSCHAP00000046354	ENSCHAP00000004007	ENSCHAP00000046354	annotation not available	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	0.626
ENSCHAP00000004007	ENSCHAP00000057215	ENSCHAP00000004007	ENSCHAP00000057215	annotation not available	TSC complex subunit 1b.	0.626
ENSCHAP00000004007	cct5	ENSCHAP00000004007	ENSCHAP00000022063	annotation not available	Chaperonin containing TCP1 subunit 5.	0.578
ENSCHAP00000010391	ENSCHAP00000002550	ENSCHAP00000010391	ENSCHAP00000002550	Chaperonin containing TCP1, subunit 7 (eta).	TNF receptor-associated protein 1.	0.886
ENSCHAP00000010391	ENSCHAP00000004007	ENSCHAP00000010391	ENSCHAP00000004007	Chaperonin containing TCP1, subunit 7 (eta).	annotation not available	0.656
ENSCHAP00000010391	ENSCHAP00000029009	ENSCHAP00000010391	ENSCHAP00000029009	Chaperonin containing TCP1, subunit 7 (eta).	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	0.928
ENSCHAP00000010391	ENSCHAP00000029858	ENSCHAP00000010391	ENSCHAP00000029858	Chaperonin containing TCP1, subunit 7 (eta).	TSC complex subunit 1a.	0.928
ENSCHAP00000010391	ENSCHAP00000030214	ENSCHAP00000010391	ENSCHAP00000030214	Chaperonin containing TCP1, subunit 7 (eta).	annotation not available	0.928
ENSCHAP00000010391	ENSCHAP00000032552	ENSCHAP00000010391	ENSCHAP00000032552	Chaperonin containing TCP1, subunit 7 (eta).	annotation not available	0.928