STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000004017Farnesyl-diphosphate farnesyltransferase 1. (561 aa)    
Predicted Functional Partners:
sc5d
sterol-C5-desaturase.
  
 0.998
LOC105904925
Lanosterol 14-alpha demethylase.
  
 
 0.993
ENSCHAP00000053873
Phosphoethanolamine methyltransferase.
   
 0.987
hsd17b7
Hydroxysteroid 17-beta dehydrogenase 7.
   
 
 0.982
fdps
Farnesyl diphosphate synthase.
  
 0.980
ERG28
Ergosterol biosynthesis 28 homolog.
   
 
 0.978
ENSCHAP00000005887
Squalene epoxidase b.
 
 
 0.977
sqle
Squalene epoxidase.
 
 
 0.977
ggps1
Geranylgeranyl diphosphate synthase 1.
  
 0.965
pdss1
Decaprenyl diphosphate synthase subunit 1.
  
 0.961
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.