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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000004019Dihydrouridine synthase 2. (513 aa)    
Predicted Functional Partners:
ENSCHAP00000026988
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.993
ENSCHAP00000007215
THUMP domain containing 1.
  
 
 0.788
ENSCHAP00000022126
Dihydrouridine synthase 1-like (S. cerevisiae).
   
  
 0.786
gnl2
G protein nucleolar 2.
   
    0.759
nsun5
NOP2/Sun RNA methyltransferase 5.
  
 
 0.757
ENSCHAP00000026317
UTP3 small subunit processome component.
   
    0.746
ENSCHAP00000011938
BUD23 rRNA methyltransferase and ribosome maturation factor.
  
    0.745
ENSCHAP00000031208
Pseudouridylate synthase 3.
  
 
 0.745
ENSCHAP00000058008
Large 60S subunit nuclear export GTPase 1.
   
    0.721
dimt1
DIMT1 rRNA methyltransferase and ribosome maturation factor.
  
  
 0.712
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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