STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000004055Calcium channel, voltage-dependent, gamma subunit 4a. (342 aa)    
Predicted Functional Partners:
gria2
Glutamate ionotropic receptor AMPA type subunit 2.
   
 0.888
ENSCHAP00000061965
Glutamate receptor, ionotropic, AMPA 2a.
   
 0.888
ENSCHAP00000029157
Protein phosphatase 2, regulatory subunit B, delta.
    
  0.849
LOC105903502
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform-like.
    
  0.849
LOC105898521
Voltage-dependent calcium channel gamma-1 subunit-like.
     
 0.838
ENSCHAP00000010580
Calcium voltage-gated channel subunit alpha1 Ia.
     
 0.833
ENSCHAP00000004230
Calcium channel, voltage-dependent, beta 2b.
     
 0.830
ENSCHAP00000012838
Calcium channel, voltage-dependent, beta 4b subunit.
     
 0.830
ENSCHAP00000034826
Calcium channel, voltage-dependent, beta 1 subunit.
     
 0.830
CACNG1
Calcium voltage-gated channel auxiliary subunit gamma 1.
     
 0.811
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.