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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105898922Retinoid isomerohydrolase. (564 aa)    
Predicted Functional Partners:
ENSCHAP00000042044
annotation not available
     
 0.884
lrat
Lecithin retinol acyltransferase.
     
 0.872
ENSCHAP00000002668
Retinol dehydrogenase 1.
   
 
 0.867
ENSCHAP00000017144
Lecithin retinol acyltransferase b, tandem duplicate 1.
     
 0.867
ENSCHAP00000027713
annotation not available
     
 0.859
LOC105900613
Retinol dehydrogenase 10-B-like.
     
 0.859
ENSCHAP00000048638
Retinol dehydrogenase 10a.
     
 0.856
ENSCHAP00000013739
Diacylglycerol O-acyltransferase 1b.
   
 
 0.854
LOC105904953
Diacylglycerol O-acyltransferase 1-like.
   
 
 0.853
rpe65
Retinoid isomerohydrolase RPE65.
  
  
 
0.850
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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