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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105893202reticulon-3-B-like. (263 aa)    
Predicted Functional Partners:
vta1
Vesicle trafficking 1.
    
   0.696
gch1
GTP cyclohydrolase 1.
    
   0.696
ENSCHAP00000035674
Beta-secretase 2.
   
 0.688
ENSCHAP00000046426
Beta-secretase 1.
   
 0.688
ENSCHAP00000038513
Receptor accessory protein 5.
    
 
 0.602
ENSCHAP00000018648
SEC63 homolog, protein translocation regulator.
    
 
 0.600
ENSCHAP00000006292
Leucine rich repeat containing 24.
    
 0.580
ENSCHAP00000015988
Nerve growth factor receptor a (TNFR superfamily, member 16).
     
 0.576
ENSCHAP00000018768
Receptor accessory protein 6.
    
 
 0.576
ENSCHAP00000057597
Sorting nexin 15.
    
   0.573
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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