STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000004169Sortilin related VPS10 domain containing receptor 3b. (716 aa)    
Predicted Functional Partners:
ENSCHAP00000060131
Cyclin G associated kinase.
     
 0.981
ENSCHAP00000037904
Sortilin 1b.
    
0.870
ENSCHAP00000015988
Nerve growth factor receptor a (TNFR superfamily, member 16).
    
 0.789
psmb1
Proteasome 20S subunit beta 1.
    
  0.781
psma1
Proteasome 20S subunit alpha 1.
    
  0.781
ENSCHAP00000002433
Proteasome 20S subunit beta 4.
    
  0.712
psmb2
Proteasome 20S subunit beta 2.
    
  0.712
ENSCHAP00000005340
Proteasome 20S subunit beta 3.
    
  0.710
PSMA4
Proteasome 20S subunit alpha 4.
    
  0.709
ENSCHAP00000057780
Nerve growth factor a (beta polypeptide).
    
 
 0.706
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.