Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000004240annotation not available (481 aa)    
Predicted Functional Partners:
LOC105901516
Calpain small subunit 1-like.
 
 
 0.935
ENSCHAP00000030296
BCL2 associated X, apoptosis regulator a.
   
 
 0.904
LOC105889048
Apoptosis regulator BAX-like.
   
 
 0.901
ENSCHAP00000061257
Calpastatin.
   
 0.863
LOC105909712
Calpain small subunit 1-like.
 
 
 0.848
ENSCHAP00000003852
penta-EF-hand domain containing 1.
    
  0.487
ENSCHAP00000014874
annotation not available
    
  0.487
sri
Sorcin.
    
  0.487
pdcd6
Programmed cell death 6.
    
  0.487
ENSCHAP00000009363
annotation not available
  
 
0.486
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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