STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000004258Ciliary associated calcium binding coiled-coil 1. (232 aa)    
Predicted Functional Partners:
ENSCHAP00000054339
annotation not available
    
 0.894
tm9sf2
Transmembrane 9 superfamily member 2.
   
    0.707
LOC105912543
Transmembrane 9 superfamily member 2-like.
   
    0.707
SBSPON
Somatomedin B and thrombospondin type 1 domain containing.
    
 0.663
h6pd
Hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase.
   
 
 0.609
ENSCHAP00000033307
annotation not available
   
    0.590
ENSCHAP00000061602
Transmembrane 9 superfamily protein member 4.
   
    0.590
ENSCHAP00000040372
Lin-52 DREAM MuvB core complex component.
    
 0.585
lin54
Lin-54 DREAM MuvB core complex component.
    
 0.577
ENSCHAP00000013547
Replication protein A1.
    
 0.561
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.