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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000004284Retinoblastoma binding protein 5. (579 aa)    
Predicted Functional Partners:
LOC105907910
CXXC-type zinc finger protein 1-like.
    
 0.999
ENSCHAP00000030788
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 0.999
ENSCHAP00000034369
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.999
ENSCHAP00000007184
Lysine (K)-specific demethylase 6B, b.
    
 0.997
ENSCHAP00000027219
SET domain containing 1A, histone lysine methyltransferase.
    
 0.997
ENSCHAP00000032575
Lysine (K)-specific demethylase 6B, a.
    
 0.997
ENSCHAP00000042546
SET domain containing 1B, histone lysine methyltransferase a.
    
 0.997
ENSCHAP00000047368
Lysine (K)-specific demethylase 6A.
    
 0.997
ENSCHAP00000048221
WD repeat domain 82.
   
 0.997
ENSCHAP00000058207
WD repeat domain 5.
   
0.997
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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