STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000004287Si:ch211-156l18.8. (1775 aa)    
Predicted Functional Partners:
ENSCHAP00000027391
WD repeat domain 90.
    
   0.662
ENSCHAP00000049610
annotation not available
    
 0.604
ENSCHAP00000058691
NME/NM23 family member 8.
    
 0.604
ENSCHAP00000009919
Si:dkey-28e7.3.
      
 0.569
pacrg
Parkin coregulated.
    
 
 0.534
dynlt1
Dynein light chain Tctex-type 1.
    
 
 0.524
ENSCHAP00000005464
Guanine nucleotide binding protein (G protein), beta 5b.
    
 0.521
LOC105892356
Guanine nucleotide-binding protein subunit beta-5.
    
 0.521
ENSCHAP00000026746
annotation not available
    
 
 0.514
ENSCHAP00000034081
Protein tyrosine kinase 7a.
    
  0.496
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.