STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ckmERCC excision repair 2, TFIIH core complex helicase subunit. (760 aa)    
Predicted Functional Partners:
mnat1
MNAT1 component of CDK activating kinase.
    
 0.999
ENSCHAP00000002381
Excision repair cross-complementation group 3.
   
 0.999
ENSCHAP00000026594
General transcription factor IIH, polypeptide 3.
    
 0.999
gtf2h1
General transcription factor IIH subunit 1.
    
 0.999
ENSCHAP00000035732
General transcription factor IIE, polypeptide 2, beta.
    
 0.999
LOC105889985
General transcription factor IIH subunit 2-like.
    
 0.999
ccnh
Cyclin H.
    
 0.998
ENSCHAP00000037283
MMS19 homolog, cytosolic iron-sulfur assembly component.
    
 0.998
ENSCHAP00000005390
General transcription factor IIH, polypeptide 5.
    
 0.997
gtf2b
General transcription factor IIB.
    
 0.997
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.