STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smg8SMG8 nonsense mediated mRNA decay factor. (925 aa)    
Predicted Functional Partners:
ENSCHAP00000031313
SMG9 nonsense mediated mRNA decay factor.
    
 0.999
ENSCHAP00000043280
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
   
 0.992
ENSCHAP00000036066
Mechanistic target of rapamycin kinase.
   
 0.939
ENSCHAP00000055259
Protein kinase, DNA-activated, catalytic subunit.
   
 0.938
dcp1a
Decapping mRNA 1A.
   
 
 0.866
smg5
SMG5 nonsense mediated mRNA decay factor.
     
 0.846
ENSCHAP00000021500
SMG6 nonsense mediated mRNA decay factor.
     
 0.846
smg7
SMG7 nonsense mediated mRNA decay factor.
     
 0.836
ENSCHAP00000019698
Decapping mRNA 1B.
   
 
 0.817
ENSCHAP00000016945
annotation not available
     
 0.666
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.