STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000004368annotation not available (141 aa)    
Predicted Functional Partners:
ENSCHAP00000048098
annotation not available
    
 
 0.893
ENSCHAP00000043280
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
   
  0.874
ENSCHAP00000032945
5'-3' exoribonuclease 1.
   
   0.740
dctn2
Dynactin subunit 2.
    
 0.720
ENSCHAP00000014041
annotation not available
   
    0.717
ENSCHAP00000013787
PHD finger protein 3.
   
    0.699
ENSCHAP00000011669
BUB3 mitotic checkpoint protein.
    
 0.668
ENSCHAP00000008989
ATRX chromatin remodeler.
   
   0.644
cep19
Centrosomal protein 19.
    
 
 0.634
LOC105895732
Microtubule-associated protein RP/EB family member 3-like.
    
 
 0.622
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.