STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smndc1Survival motor neuron domain containing 1. (236 aa)    
Predicted Functional Partners:
ENSCHAP00000016388
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 
 0.988
phf5a
PHD finger protein 5A.
     
 0.988
rbm17
RNA binding motif protein 17.
   
 
  0.985
prpf6
pre-mRNA processing factor 6.
    
 
 0.963
sf3a2
Splicing factor 3a subunit 2.
    
  0.938
ENSCHAP00000046146
Small nuclear ribonucleoprotein polypeptide A.
     
 0.919
sf3b1
Splicing factor 3b subunit 1.
   
 0.893
ENSCHAP00000005994
annotation not available
    
  0.890
sf3b3
Splicing factor 3b subunit 3.
  
 
 0.857
snrpf
Small nuclear ribonucleoprotein polypeptide F.
    
 0.855
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.